<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:creator>Bertels F</dc:creator>
  <dc:creator>Marzel A</dc:creator>
  <dc:creator>Leventhal G</dc:creator>
  <dc:creator>Mitov V</dc:creator>
  <dc:creator>Fellay J</dc:creator>
  <dc:creator>Günthard HF</dc:creator>
  <dc:creator>Böni J</dc:creator>
  <dc:creator>Yerly S</dc:creator>
  <dc:creator>Klimkait T</dc:creator>
  <dc:creator>Aubert V</dc:creator>
  <dc:creator>Battegay M</dc:creator>
  <dc:creator>Rauch A</dc:creator>
  <dc:creator>Cavassini M</dc:creator>
  <dc:creator>Calmy A</dc:creator>
  <dc:creator>Bernasconi E</dc:creator>
  <dc:creator>Schmid P</dc:creator>
  <dc:creator>Scherrer AU</dc:creator>
  <dc:creator>Müller V</dc:creator>
  <dc:creator>Bonhoeffer S</dc:creator>
  <dc:creator>Kouyos R</dc:creator>
  <dc:creator>Regoes RR</dc:creator>
  <dc:date>2018</dc:date>
  <dc:description xmlns:ns0="xml" ns0:lang="en">Pathogen strains may differ in virulence because they attain different loads in their hosts, or because they induce different disease-causing mechanisms independent of their load. In evolutionary ecology, the latter is referred to as "per-parasite pathogenicity". Using viral load and CD4+ T-cell measures from 2014 HIV-1 subtype B-infected individuals enrolled in the Swiss HIV Cohort Study, we investigated if virulence-measured as the rate of decline of CD4+ T cells-and per-parasite pathogenicity are heritable from donor to recipient. We estimated heritability by donor-recipient regressions applied to 196 previously identified transmission pairs, and by phylogenetic mixed models applied to a phylogenetic tree inferred from HIV pol sequences. Regressing the CD4+ T-cell declines and per-parasite pathogenicities of the transmission pairs did not yield heritability estimates significantly different from zero. With the phylogenetic mixed model, however, our best estimate for the heritability of the CD4+ T-cell decline is 17% (5-30%), and that of the per-parasite pathogenicity is 17% (4-29%). Further, we confirm that the set-point viral load is heritable, and estimate a heritability of 29% (12-46%). Interestingly, the pattern of evolution of all these traits differs significantly from neutrality, and is most consistent with stabilizing selection for the set-point viral load, and with directional selection for the CD4+ T-cell decline and the per-parasite pathogenicity. Our analysis shows that the viral genotype affects virulence mainly by modulating the per-parasite pathogenicity, while the indirect effect via the set-point viral load is minor.</dc:description>
  <dc:identifier>https://sonar.ch/global/documents/217740</dc:identifier>
  <dc:language>eng</dc:language>
  <dc:relation>info:eu-repo/semantics/altIdentifier/doi/10.1093/molbev/msx246</dc:relation>
  <dc:relation>info:eu-repo/semantics/altIdentifier/pmid/29029206</dc:relation>
  <dc:source>Molecular biology and evolution. - 2018</dc:source>
  <dc:subject xmlns:ns1="xml" ns1:lang="en">HIV</dc:subject>
  <dc:subject xmlns:ns2="xml" ns2:lang="en">disease tolerance</dc:subject>
  <dc:subject xmlns:ns3="xml" ns3:lang="en">evolution of virulence</dc:subject>
  <dc:subject xmlns:ns4="xml" ns4:lang="en">heritability</dc:subject>
  <dc:subject xmlns:ns5="xml" ns5:lang="en">per-parasite pathogenicity</dc:subject>
  <dc:subject xmlns:ns6="xml" ns6:lang="en">Adult</dc:subject>
  <dc:subject xmlns:ns7="xml" ns7:lang="en">CD4 Lymphocyte Count</dc:subject>
  <dc:subject xmlns:ns8="xml" ns8:lang="en">CD4-Positive T-Lymphocytes</dc:subject>
  <dc:subject xmlns:ns9="xml" ns9:lang="en">Cohort Studies</dc:subject>
  <dc:subject xmlns:ns10="xml" ns10:lang="en">Female</dc:subject>
  <dc:subject xmlns:ns11="xml" ns11:lang="en">Genotype</dc:subject>
  <dc:subject xmlns:ns12="xml" ns12:lang="en">HIV Infections</dc:subject>
  <dc:subject xmlns:ns13="xml" ns13:lang="en">HIV-1</dc:subject>
  <dc:subject xmlns:ns14="xml" ns14:lang="en">Humans</dc:subject>
  <dc:subject xmlns:ns15="xml" ns15:lang="en">Male</dc:subject>
  <dc:subject xmlns:ns16="xml" ns16:lang="en">Phenotype</dc:subject>
  <dc:subject xmlns:ns17="xml" ns17:lang="en">Phylogeny</dc:subject>
  <dc:subject xmlns:ns18="xml" ns18:lang="en">Viral Load</dc:subject>
  <dc:subject xmlns:ns19="xml" ns19:lang="en">Virulence</dc:subject>
  <dc:title xmlns:ns20="xml" ns20:lang="en">Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity.</dc:title>
  <dc:type>http://purl.org/coar/resource_type/c_6501</dc:type>
</oai_dc:dc>
