Macromolecular modeling and design in Rosetta: recent methods and frameworks.

• Leman JK Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA. Julia.koehler.leman@nyu.edu.
• Weitzner BD Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.
• Lewis SM Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
• Adolf-Bryfogle J Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
• Alam N Department of Microbiology and Molecular Genetics, IMRIC, Ein Kerem Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
• Alford RF Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.
• Aprahamian M Department of Chemistry and Biochemistry, Ohio State University, Columbus, OH, USA.
• Baker D Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Barlow KA Graduate Program in Bioinformatics, University of California San Francisco, San Francisco, CA, USA.
• Barth P Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
• Basanta B Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Bender BJ Department of Pharmacology, Vanderbilt University, Nashville, TN, USA.
• Blacklock K Institute of Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
• Bonet J Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
• Boyken SE Institute for Protein Design, University of Washington, Seattle, WA, USA.
• Bradley P Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
• Bystroff C Department of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY, USA.
• Conway P Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Cooper S Khoury College of Computer Sciences, Northeastern University, Boston, MA, USA.
• Correia BE Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
• Coventry B Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Das R Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA.
• De Jong RM DSM Biotechnology Center, Delft, the Netherlands.
• DiMaio F Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Dsilva L Khoury College of Computer Sciences, Northeastern University, Boston, MA, USA.
• Dunbrack R Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia, PA, USA.
• Ford AS Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Frenz B Institute for Protein Design, University of Washington, Seattle, WA, USA.
• Fu DY Department of Chemistry, Vanderbilt University, Nashville, TN, USA.
• Geniesse C Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA.
• Goldschmidt L Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Gowthaman R University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, MD, USA.
• Gray JJ Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.
• Gront D Faculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, Warsaw, Poland.
• Guffy S Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
• Horowitz S Department of Chemistry & Biochemistry, University of Denver, Denver, CO, USA.
• Huang PS Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Huber T Research School of Chemistry, Australian National University, Canberra, Australian Capital Territory, Australia.
• Jacobs TM Program in Bioinformatics and Computational Biology, Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
• Jeliazkov JR Program in Molecular Biophysics, Johns Hopkins University, Baltimore, MD, USA.
• Johnson DK Center for Computational Biology, University of Kansas, Lawrence, KS, USA.
• Kappel K Biophysics Program, Stanford University, Stanford, CA, USA.
• Karanicolas J Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia, PA, USA.
• Khakzad H Swiss Institute of Bioinformatics, Lausanne, Switzerland.
• Khar KR Cyrus Biotechnology, Seattle, WA, USA.
• Khare SD Institute of Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
• Khatib F Department of Computer and Information Science, University of Massachusetts Dartmouth, Dartmouth, MA, USA.
• Khramushin A Department of Microbiology and Molecular Genetics, IMRIC, Ein Kerem Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
• King IC Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Kleffner R Khoury College of Computer Sciences, Northeastern University, Boston, MA, USA.
• Koepnick B Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Kortemme T Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.
• Kuenze G Department of Chemistry, Vanderbilt University, Nashville, TN, USA.
• Kuhlman B Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
• Kuroda D Medical Device Development and Regulation Research Center, School of Engineering, University of Tokyo, Tokyo, Japan.
• Labonte JW Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.
• Lai JK Baylor College of Medicine, Department of Pharmacology, Houston, TX, USA.
• Lapidoth G Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.
• Leaver-Fay A Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
• Lindert S Department of Chemistry and Biochemistry, Ohio State University, Columbus, OH, USA.
• Linsky T Department of Biochemistry, University of Washington, Seattle, WA, USA.
• London N Department of Microbiology and Molecular Genetics, IMRIC, Ein Kerem Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
• Lubin JH Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.
• Lyskov S Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.
• Maguire J Program in Bioinformatics and Computational Biology, Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
• Malmström L Swiss Institute of Bioinformatics, Lausanne, Switzerland.
• Marcos E Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Marcu O Department of Microbiology and Molecular Genetics, IMRIC, Ein Kerem Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
• Marze NA Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.
• Meiler J Center for Structural Biology, Vanderbilt University, Nashville, TN, USA.
• Moretti R Department of Chemistry, Vanderbilt University, Nashville, TN, USA.
• Mulligan VK Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA.
• Nerli S Department of Computer Science, University of California Santa Cruz, Santa Cruz, CA, USA.
• Norn C Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.
• Ó'Conchúir S Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.
• Ollikainen N Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.
• Ovchinnikov S Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Pacella MS Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.
• Pan X Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.
• Park H Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Pavlovicz RE Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Pethe M Department of Chemistry and Chemical Biology, The State University of New Jersey, Piscataway, NJ, USA.
• Pierce BG University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, MD, USA.
• Pilla KB Research School of Chemistry, Australian National University, Canberra, Australian Capital Territory, Australia.
• Raveh B Department of Microbiology and Molecular Genetics, IMRIC, Ein Kerem Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
• Renfrew PD Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA.
• Burman SSR Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.
• Rubenstein A Institute of Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
• Sauer MF Chemical and Physical Biology Program, Vanderbilt Vaccine Center, Vanderbilt University, Nashville, TN, USA.
• Scheck A Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
• Schief W Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
• Schueler-Furman O Department of Microbiology and Molecular Genetics, IMRIC, Ein Kerem Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
• Sedan Y Department of Microbiology and Molecular Genetics, IMRIC, Ein Kerem Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
• Sevy AM Chemical and Physical Biology Program, Vanderbilt Vaccine Center, Vanderbilt University, Nashville, TN, USA.
• Sgourakis NG Department of Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, CA, USA.
• Shi L Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Siegel JB Department of Chemistry, University of California, Davis, Davis, CA, USA.
• Silva DA Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Smith S Department of Chemistry, Vanderbilt University, Nashville, TN, USA.
• Song Y Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Stein A Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.
• Szegedy M Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
• Teets FD Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
• Thyme SB Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Wang RY Department of Biochemistry, University of Washington, Seattle, WA, USA.
• Watkins A Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA.
• Zimmerman L Department of Microbiology and Molecular Genetics, IMRIC, Ein Kerem Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
• Bonneau R Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA. Bonneau@nyu.edu.

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Macromolecular Substances

Models, Molecular

Molecular Docking Simulation

Peptidomimetics

Protein Conformation

Proteins

Software