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Leveraging Symmetries of Static Atomic Multipole Electrostatics in Molecular Dynamics Simulations.
Journal article

Leveraging Symmetries of Static Atomic Multipole Electrostatics in Molecular Dynamics Simulations.

  • Bereau T Department of Chemistry, University of Basel , 4056 Basel, Switzerland.
  • Kramer C Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck , 6020 Innsbruck, Austria.
  • Meuwly M Department of Chemistry, University of Basel , 4056 Basel, Switzerland.
  • 2015-11-24
Published in:
  • Journal of chemical theory and computation. - 2013
Physical and Theoretical Chemistry
Computer Science Applications
English Multipole (MTP) electrostatics provides the means to describe anisotropic interactions in a rigorous and systematic manner. A number of earlier molecular dynamics (MD) implementations have increasingly relied on the use of molecular symmetry to reduce the (possibly large) number of MTP interactions. Here, we present a CHARMM implementation of MTP electrostatics in terms of spherical harmonics. By relying on a systematic set of reference-axis systems tailored to various chemical environments, we obtain an implementation that is both efficient and scalable for (bio)molecular systems. We apply the method to a series of halogenated compounds to show (i) energy conservation; (ii) improvements in reproducing thermodynamic properties compared to standard point-charge (PC) models; (iii) performance of the code; and (iv) better stabilization of a brominated ligand in a target protein, compared to a PC force field. The implementation provides interesting perspectives toward a dual PC/MTP resolution, à la QM/MM.
Language
  • English
Open access status
closed
Identifiers
Persistent URL
https://sonar.ch/global/documents/231640
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