Complex Structural PPT1 Variant Associated with Non-syndromic Canine Retinal Degeneration.

Murgiano L; Becker D; Torjman D; Niggel JK; Milano A; Cullen C; Feng R; Wang F; Jagannathan V; Pearce-Kelling S; Katz ML; Leeb T; Aguirre GD

doi:10.1534/g3.118.200859

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Journal article

Complex Structural PPT1 Variant Associated with Non-syndromic Canine Retinal Degeneration.

Murgiano L Department of Clinical Sciences & Advanced Medicine, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA gda@vet.upenn.edu leomur@vet.upenn.edu.
Becker D Department of Clinical Sciences & Advanced Medicine, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA.
Torjman D Department of Clinical Sciences & Advanced Medicine, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA.
Niggel JK Department of Clinical Sciences & Advanced Medicine, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA.
Milano A OptiGen, LLC, Cornell Business & Technology Park, Ithaca, NY.
Cullen C CullenWebb Animal Eye Specialists, Riverview, N.B Canada.
Feng R Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA.
Wang F Department of Molecular Cardiology, Cleveland Clinic Lerner Research Institute, Cleveland, OH.
Jagannathan V Institute of Genetics, Vetsuisse Faculty, University of Bern, 3001 Bern, Switzerland.
Pearce-Kelling S OptiGen, LLC, Cornell Business & Technology Park, Ithaca, NY.
Katz ML Mason Eye Institute, University of Missouri School of Medicine Columbia, Missouri.
Leeb T Institute of Genetics, Vetsuisse Faculty, University of Bern, 3001 Bern, Switzerland.
Aguirre GD Department of Clinical Sciences & Advanced Medicine, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA gda@vet.upenn.edu leomur@vet.upenn.edu.

2018-12-14

Published in:

G3 (Bethesda, Md.). - 2019

palmitoyl protein thioesterase

Polymorphism, Single Nucleotide

English Rod and cone photoreceptors are specialized retinal neurons that have a fundamental role in visual perception, capturing light and transducing it into a neuronal signal. Aberrant functioning of rod and/or cone photoreceptors can ultimately lead to progressive degeneration and eventually blindness. In man, many rod and rod-cone degenerative diseases are classified as forms of retinitis pigmentosa (RP). Dogs also have a comparable disease grouping termed progressive retinal atrophy (PRA). These diseases are generally due to single gene defects and follow Mendelian inheritance.We collected 51 DNA samples from Miniature Schnauzers affected by PRA (average age of diagnosis ∼3.9 ±1 years), as well as from 56 clinically normal controls of the same breed (average age ∼6.6 ±2.8 years). Pedigree analysis suggested monogenic autosomal recessive inheritance of PRA. GWAS and homozygosity mapping defined a critical interval in the first 4,796,806 bp of CFA15. Whole genome sequencing of two affected cases, a carrier and a control identified two candidate variants within the critical interval. One was an intronic SNV in HIVEP3, and the other was a complex structural variant consisting of the duplication of exon 5 of the PPT1 gene along with a conversion and insertion (named PPT1dci ). PPT1dci was confirmed homozygous in a cohort of 22 cases, and 12 more cases were homozygous for the CFA15 haplotype. Additionally, the variant was found homozygous in 6 non-affected dogs of age higher than the average age of onset. The HIVEP3 variant was found heterozygous (n = 4) and homozygous wild-type (n = 1) in cases either homozygous for PPT1dci or for the mapped CFA15 haplotype. We detected the wildtype and three aberrant PPT1 transcripts in isolated white blood cell mRNA extracted from a PRA case homozygous for PPT1dci , and the aberrant transcripts involved inclusion of the duplicated exon 5 and novel exons following the activation of cryptic splice sites. No neurological signs were detected among the dogs homozygous for the PPT1dci variant. Therefore, we propose PPT1dci as causative for a non-syndromic form of PRA (PRA PPT1 ) that shows incomplete penetrance in Miniature Schnauzers, potentially related to the presence of the wild-type transcript. To our knowledge, this is the first case of isolated retinal degeneration associated with a PPT1 variant.

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