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Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

  • Bowman JL School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia. Electronic address: john.bowman@monash.edu.
  • Kohchi T Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan. Electronic address: tkohchi@lif.kyoto-u.ac.jp.
  • Yamato KT Faculty of Biology-Oriented Science and Technology, Kindai University, 930 Nishimitani, Kinokawa, Wakayama 649-6493, Japan. Electronic address: kyamato@waka.kindai.ac.jp.
  • Jenkins J Department of Energy Joint Genome Institute, Walnut Creek, CA, USA; HudsonAlpha Institute of Biotechnology, Huntsville, AL, USA.
  • Shu S Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
  • Ishizaki K Graduate School of Science, Kobe University, Kobe 657-8501, Japan.
  • Yamaoka S Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Nishihama R Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Nakamura Y National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan.
  • Berger F Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr. Bohr-Gasse 3, 1030 Vienna, Austria.
  • Adam C Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
  • Aki SS Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara 630-0192, Japan.
  • Althoff F Botany Department, University of Osnabrück, Barbarastr. 11, D-49076 Osnabrück, Germany.
  • Araki T Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Arteaga-Vazquez MA Universidad Veracruzana, INBIOTECA - Instituto de Biotecnología y Ecología Aplicada, Av. de las Culturas Veracruzanas No.101, Colonia Emiliano Zapata, 91090, Xalapa, Veracruz, México.
  • Balasubrmanian S School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia.
  • Barry K Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
  • Bauer D Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
  • Boehm CR Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, United Kingdom.
  • Briginshaw L School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia.
  • Caballero-Perez J National Laboratory of Genomics for Biodiversity, CINVESTAV-IPN, Km 9.6 Lib. Norte Carr. Irapuato-León, 36821, Irapuato, Guanajuato, México.
  • Catarino B Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, UK.
  • Chen F Department of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
  • Chiyoda S Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Chovatia M Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
  • Davies KM The New Zealand Institute for Plant & Food Research Limited, Private Bag 11-600, Palmerston North, New Zealand.
  • Delmans M Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, United Kingdom.
  • Demura T Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara 630-0192, Japan.
  • Dierschke T School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia; Botany Department, University of Osnabrück, Barbarastr. 11, D-49076 Osnabrück, Germany.
  • Dolan L Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, UK.
  • Dorantes-Acosta AE Universidad Veracruzana, INBIOTECA - Instituto de Biotecnología y Ecología Aplicada, Av. de las Culturas Veracruzanas No.101, Colonia Emiliano Zapata, 91090, Xalapa, Veracruz, México.
  • Eklund DM School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia; Department of Plant Ecology and Evolution, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-75236 Uppsala, Sweden.
  • Florent SN School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia.
  • Flores-Sandoval E School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia.
  • Fujiyama A National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan.
  • Fukuzawa H Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Galik B Bioinformatics & Scientific Computing, Vienna Biocenter Core Facilities (VBCF), Dr. Bohr-Gasse 3, 1030 Vienna, Austria.
  • Grimanelli D Institut de Recherche pour le Développement (IRD), UMR232, Université de Montpellier, Montpellier 34394, France.
  • Grimwood J Department of Energy Joint Genome Institute, Walnut Creek, CA, USA; HudsonAlpha Institute of Biotechnology, Huntsville, AL, USA.
  • Grossniklaus U Department of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, 8008 Zürich, Switzerland.
  • Hamada T Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902 Japan.
  • Haseloff J Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, United Kingdom.
  • Hetherington AJ Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, UK.
  • Higo A Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Hirakawa Y School of Biological Sciences, Monash University, Melbourne VIC 3800, Australia; Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan; Department of Life Science, Faculty of Science, Gakushuin University, Tokyo 171-8588, Japan.
  • Hundley HN Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
  • Ikeda Y Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama 710-0046, Japan.
  • Inoue K Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Inoue SI Division of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya 464-8602, Japan.
  • Ishida S Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Jia Q Department of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
  • Kakita M Division of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya 464-8602, Japan.
  • Kanazawa T National Institute for Basic Biology, 38 Nishigounaka, Myodaiji, Okazaki 444-8585, Japan; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan.
  • Kawai Y Department of Integrative Genomics, Tohoku Medical Bank Organization, Tohoku University, Aoba, Sendai 980-8573, Japan.
  • Kawashima T Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr. Bohr-Gasse 3, 1030 Vienna, Austria; Department of Plant and Soil Sciences, University of Kentucky, 321 Plant Science Building, 1405 Veterans Dr., Lexington, KY 40546, USA.
  • Kennedy M Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
  • Kinose K Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Kinoshita T Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan; Department of Life Science, Faculty of Science, Gakushuin University, Tokyo 171-8588, Japan; Division of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya 464-8602, Japan.
  • Kohara Y National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan.
  • Koide E Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Komatsu K Department of Bioproduction Technology, Junior College of Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo 156-8502, Japan.
  • Kopischke S Botany Department, University of Osnabrück, Barbarastr. 11, D-49076 Osnabrück, Germany.
  • Kubo M Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara 630-0192, Japan.
  • Kyozuka J Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan.
  • Lagercrantz U Department of Plant Ecology and Evolution, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-75236 Uppsala, Sweden.
  • Lin SS Institute of Biotechnology, National Taiwan University, Taipei, Taiwan.
  • Lindquist E Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
  • Lipzen AM Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
  • Lu CW Institute of Biotechnology, National Taiwan University, Taipei, Taiwan.
  • De Luna E Instituto de Ecología, AC., Red de Biodiversidad y Sistemática, Xalapa, Veracruz, 91000, México.
  • Martienssen RA Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY, USA.
  • Minamino N National Institute for Basic Biology, 38 Nishigounaka, Myodaiji, Okazaki 444-8585, Japan; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan.
  • Mizutani M Graduate School of Agricultural Science, Kobe University, Rokkodai, Nada, Kobe 657-8501, Japan.
  • Mizutani M Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Mochizuki N Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
  • Monte I Department Genética Molecular de Plantas, Centro Nacional de Biotecnologia-CSIC, Universidad Autónoma de Madrid 28049 Madrid. Spain.
  • Mosher R The School of Plant Sciences, The University of Arizona, Tuscon, AZ, USA.
  • Nagasaki H National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan; Department of Technology Development, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.
  • Nakagami H RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan; Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany.
  • Naramoto S Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan.
  • Nishitani K Laboratory of Plant Cell Wall Biology, Graduate School of Life Sciences, Tohoku University, Aoba, Sendai 980-8578, Japan.
  • Ohtani M Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara 630-0192, Japan.
  • Okamoto T Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, Japan.
  • Okumura M Division of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya 464-8602, Japan.
  • Phillips J Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
  • Pollak B Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, United Kingdom.
  • Reinders A Department of Plant and Microbial Biology, University of Minnesota, St. Paul, MN, USA.
  • Rövekamp M Department of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, 8008 Zürich, Switzerland.
  • Sano R Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara 630-0192, Japan.
  • Sawa S Graduate school of Science and Technology, Kumamoto University, Kurokami 2-39-1, Kumamoto 860-8555, Japan.
  • Schmid MW Department of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, 8008 Zürich, Switzerland.
  • Shirakawa M Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Solano R Department Genética Molecular de Plantas, Centro Nacional de Biotecnologia-CSIC, Universidad Autónoma de Madrid 28049 Madrid. Spain.
  • Spunde A Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
  • Suetsugu N Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Sugano S Department of Computational Biology and Medical Sciences, the University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562 Japan.
  • Sugiyama A Research Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.
  • Sun R Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Suzuki Y Department of Computational Biology and Medical Sciences, the University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562 Japan.
  • Takenaka M Molekulare Botanik, Universität Ulm, 89069 Ulm, Germany.
  • Takezawa D Graduate School of Science and Engineering and Institute for Environmental Science and Technology, Saitama University, Saitama 338-8570, Japan.
  • Tomogane H Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Tsuzuki M Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902 Japan.
  • Ueda T National Institute for Basic Biology, 38 Nishigounaka, Myodaiji, Okazaki 444-8585, Japan.
  • Umeda M Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara 630-0192, Japan.
  • Ward JM Department of Plant and Microbial Biology, University of Minnesota, St. Paul, MN, USA.
  • Watanabe Y Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902 Japan.
  • Yazaki K Research Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.
  • Yokoyama R Laboratory of Plant Cell Wall Biology, Graduate School of Life Sciences, Tohoku University, Aoba, Sendai 980-8578, Japan.
  • Yoshitake Y Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
  • Yotsui I RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan.
  • Zachgo S Botany Department, University of Osnabrück, Barbarastr. 11, D-49076 Osnabrück, Germany.
  • Schmutz J Department of Energy Joint Genome Institute, Walnut Creek, CA, USA; HudsonAlpha Institute of Biotechnology, Huntsville, AL, USA.
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  • 2017-10-07
Published in:
  • Cell. - 2017
Marchantia polymorpha
auxin
charophycean algae
land plant evolution
sex chromosome
Adaptation, Biological
Biological Evolution
Embryophyta
Gene Expression Regulation, Plant
Genome, Plant
Marchantia
Molecular Sequence Annotation
Signal Transduction
Transcription, Genetic
English The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PAPERCLIP.
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  • English
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hybrid
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https://sonar.ch/global/documents/4302
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