Back
Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12.
Journal article

Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12.

  • Gonnet P Institute of Computational Science, Swiss Federal Institute of Technology, Zürich, Switzerland. gonnetp@inf.ethz.ch
  • Rudd KE
  • Lisacek F
  • 2004-06-03
Published in:
  • Proteomics. - 2004
Amino Acid Motifs
Aspartic Acid Endopeptidases
Bacterial Proteins
Computational Biology
Databases, Factual
Escherichia coli
Lipoproteins
Protein Sorting Signals
Proteome
English A curated set of 81 proven and 44 predicted lipoproteins of Escherichia coli K-12 was defined with the combined use of a literature survey, a variety of predictive tools and human expertise. The well-documented Gram-negative proteome of E. coli K-12 was chosen to assess how the different approaches complement each other and to ensure a stable definition of a consistent set of lipoproteins. The results of detailed analysis of such proteins at the level of a single proteome are presented, corroborated and rationalized.
Language
  • English
Open access status
closed
Identifiers
Persistent URL
https://sonar.ch/global/documents/47147
Statistics
Document views: 39 File downloads: